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VCFSorter

IBIS Helmholtz-Node extension for KNIME Workbench version 1.8.1.201707071203 by IBIS KNIME Team

The VCFSorter sorts the chromosomes of an input VCF file analogous to a reference sequence. This step is required in order to merge two VCF files with the MergeTwoVCFs node.

Options

Preference page

HTE
Set a threshold for repeated execution. Only used if HTE is enabled in the preference page.
Path to reference sequence
Set the path to the reference reference sequence. This will be done automatically if the path is already defined in the preference page.

Input Ports

Icon
Cell 0: Path to VCF file.

Output Ports

Icon
Cell 0: Path to sorted VCF file.

Views

STDOUT / STDERR
The node offers a direct view of its standard out and the standard error of the tool.

Installation

To use this node in KNIME, install KNIME4NGS from the following update site:

KNIME 4.3

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Developers

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