0 ×

PDB Connector Query Only (XML Query)

DeprecatedVernalis PDB Connector KNIME nodes package version 1.30.2.v202105121103 by Vernalis (R&D), UK

This node is no longer functional due to the shutdown of the remote webservices - Please use the new 'PDB Connector Query Builder' node instead

The PDB Connector Query Only (XML Query String) node was developed by Vernalis (Cambridge, UK) , based on the original PDB Connector node developed by Enspiral Discovery in collaboration with Vernalis (Cambridge, UK) . For feedback and more information, please contact knime@vernalis.com

Options

Query Options

Clear Query
Clear all query options. If a flow variable has been set for the XML Query, this will also be un-set
Test Query
Test the current query, with display of result count. If a flow variable has been specified for the xml query, it's value will be used in the test. (NB This behaviour is different from that in the PDB Connector node, where the 'Test' button uses the query configured in the dialog, without reference to flow variable settings.). This button also lays out the XML clearly in the XML Query String box
Messages
Messages relating to the Test Query button are displayed in this area
XML Query string
The PDB XML advanced query text should be entered here. See above for details

Input Ports

Icon
Optional flow variable connection, which could contain the XML query in a flow variable

Output Ports

Icon
One-column table of PDB IDs that match query

Views

XML Query
A view of the combined XML Query
Logical Query
A 'logical' view of the combined Query

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install Vernalis KNIME Nodes from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

You don't know what to do with this link? Read our NodePit Product and Node Installation Guide that explains you in detail how to install nodes to your KNIME Analytics Platform.

Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform. Browse NodePit from within KNIME, install nodes with just one click and share your workflows with NodePit Space.

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.