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PDB Connector XML Query Builder

DeprecatedVernalis PDB Connector KNIME nodes package version 1.30.2.v202105121103 by Vernalis (R&D), UK

This node is no longer functional due to the shutdown of the remote webservices - Please use the new 'PDB Connector Query Builder' node instead

The PDB Connector XML Query Builder node was developed by Vernalis (Cambridge, UK) , based on the original PDB Connector node developed by Enspiral Discovery in collaboration with Vernalis (Cambridge, UK) . For feedback and more information, please contact knime@vernalis.com


Query Options

Remove Similar Sequences
Control the (optional) sequence similarity filter, used to remove similar sequences from the search hits.
Match multiple query terms using
Control the composite query logic (individual query options can be either ANDed or ORed together)
Clear Query
Clear all query options
Test Query
Test the current query, with display of xml query string and result count. NB The 'Test' button uses the query configured in the dialog, without reference to flow variable settings.
Messages relating to the Test Query button are displayed in this area
XML Query string
The xml query string generated from the user settings is displayed here when the 'Test' button has been pressed

Other query option tabs

To select a query option, either check the "Selected" checkbox or click anywhere on one of the individual query parameters. To unselect a query option, uncheck the "Selected" checkbox.
Enter values for the query term in the box(es) provided

Output Ports

Flow variable containing the PDB Advanced query XML String


XML Query
A view of the combined XML Query
Logical Query
A 'logical' view of the combined Query

Best Friends (Incoming)

Best Friends (Outgoing)



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