Speedy Sequence Analysis

The node performs count and / or %age analysis of sequence residue types

This node was developed by Vernalis Research . For feedback and more information, please contact knime@vernalis.com

Options

Sequence Column
The String column containing the sequences
Sequence Alphabet
The sequence type. A warning will be set if this differs from that expected based on the column properties of the sequence column
Alphabet Subset
The subset of the alphabet to use. A warning will be set if this differs from that expected based on the column properties of the sequence column
Case sensitive parsing
If set, upper and lower case residues will be counted separately
Report Counts
The counts of each residue type are reported
Report Percentages
The percentages of each residue type are reported

Input Ports

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Incoming table of sequences

Output Ports

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The compositions of the sequences by residue

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