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Get PDB

Schrödinger extension for KNIME Workbench version 20.4.144.202011110821 by Schrödinger

Retrieves the PDB for the structure(s) with PDB code(s).

Backend implementation

utilities/getpdb
The command line tool getpdb is used to implement this node.

Options

[PDB code]{:Chain ID}
PDB code and (optional Chain ID) specified. For multiple structures, use comma ',' to separate the structures' PDB code(s).

Output Ports

Icon
Molecule with TITLE, ATOM, HETATM, MODEL, ENDMDL and TER records (for Chain if specified)

Views

Std output/error of Get PDB
Std output/error of Get PDB

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Workflows

Installation

To use this node in KNIME, install Schrödinger Extensions for KNIME from the following update site:

KNIME 4.2

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Developers

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