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Get PDB

Schrödinger extension for KNIME Workbench version 21.1.156.202102141445 by Schrödinger

Retrieves PDB structure(s) for the specified PDB code(s).

Backend implementation

utilities/getpdb
The command line tool getpdb is used to implement this node.

Options

PDB IDs
Specify comma separated list of PDB IDs and optional Chain IDs. Ex: PDB_ID[:Chain_ID],PDB_ID[:Chain_ID],...
Include biological unit
Download the complete biological unit for each PDB code. This option forces downloading from the RCSB respository, and will fail to fetch the PDB if Chain IDs are specified.
Fetching from
Choose the location to fetch the PDBs.

Output Ports

Icon
Molecules in PDB format

Views

Std output/error of Get PDB
Std output/error of Get PDB

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install Schrödinger Extensions for KNIME from the following update site:

KNIME 4.3

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Developers

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