Get PDB

Retrieves PDB structure(s) for the specified PDB code(s).

Backend implementation

Options

PDB IDs

Specify comma separated list of PDB IDs and optional Chain IDs. Ex: PDB_ID[:Chain_ID],PDB_ID[:Chain_ID],... If an PDB_ID could not be downloaded in pdb format, the node will try to download in cif format and then convert to pdb format. In this case, the any chains specified are ignored as chains cannot be specified in cif format.

Include Biological unit

Download the complete biological unit for each PDB code. This option forces downloading from the RCSB respository. If switched ON, chains cannot be specified in the PDB names.

Fetching from

Choose the location to fetch the PDBs. If 'Local Installation Only' is selected, 'Include Biological unit' will be switched OFF and disabled.

Views

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Workflows

• 02_Run Maestro, Run Maestro commandKNIME Hub
• 02_Run Maestro, Run Maestro commandKNIME Hub
• 05_Multiple Sequence ViewerKNIME Hub
• 05_Multiple Sequence ViewerKNIME Hub
• Alignment and rescoringKNIME Hub
• Show all 117 workflows

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