GET Request (JSON Response)

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In this workflow snippet, we will use the REST service provided by MyGene.info [1,2] (https://mygene.info/) to obtain a list of human genes related to specific hormones. Then, we parse the JSON response into a table that is easy to read.

1. Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, Wu C (2016) High-performance web services for querying gene and variant annotation. Genome Biology
2. Wu C, MacLeod I, Su AI (2013) BioGPS and MyGene.info: organizing online, gene-centric information. Nucl. Acids Res. 41(D1): D561-D565.

URL: MyGene.info https://mygene.info/

Nodes

• GET Request1 ×
• JSON Path1 ×
• String Manipulation1 ×
• Table Creator1 ×
• Ungroup1 ×

Extensions

• FeatureKNIME Base nodes
• FeatureKNIME Javasnippet
• FeatureKNIME JSON-Processing
• FeatureKNIME REST Client Extension

Links

• No links available