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Massspec_​Bokeh_​Server

Liquid chromatography-coupled mass-spectrometry introduction

Updated version for KNIME 4.7 and OpenMS 3.0 (nightly). Load mass spectra as tables, filter them and visualize them in different ways.

This workflow demonstrates basic loading of mass-spectrometry experiments (in mzML format) and presenting it with a Bokeh server application (python). For more information see the workflow metadata. Find it here: View -> Description Configure and set the path if using own data.Potential input data can be found under theView -> Description -> Links Remember to stop the server when you arefinished, otherwise it will continue running inthe background. Requires a python (conda)environment with pyopenms, bokeh,datashader and holoviews 3D View with Bokehsome filteringof peaksmzMLfeatureXML MS Viewer BaselineFilter Input Files Input Files This workflow demonstrates basic loading of mass-spectrometry experiments (in mzML format) and presenting it with a Bokeh server application (python). For more information see the workflow metadata. Find it here: View -> Description Configure and set the path if using own data.Potential input data can be found under theView -> Description -> Links Remember to stop the server when you arefinished, otherwise it will continue running inthe background. Requires a python (conda)environment with pyopenms, bokeh,datashader and holoviews 3D View with Bokehsome filteringof peaksmzMLfeatureXMLMS Viewer BaselineFilter Input Files Input Files

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To use this workflow in KNIME, download it from the below URL and open it in KNIME:

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Created by: pfeuffer
Created at: 2021-03-22
On NodePit since: 2023-02-02
Last update: 2024-04-24
Created with KNIME version: v4.7.0
Tags: mass spectrometryOpenMSvisualizationintroduction

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