Icon

basic_​peptide_​identification_​with_​inference

Merge PSMs of all runs for protein inference Append files (but do no merge as ProteinQuantifierneeds to distinguis where IDs came from) Spectrum Files (.mzML)Node 2Node 4Protein Database (.fasta)search engunemapping to proteinsNode 80Node 81Node 82Node 83Node 84Node 98Node 99Node 101Node 102Node 103Input Files ZipLoopStart ZipLoopEnd Input File XTandemAdapter PeptideIndexer IDMerger ProteinInference FalseDiscoveryRate MzTabExporter MzTabReader ProteinQuantifier IDMerger URI Port toVariable CSV Reader String to Path(Variable) Merge PSMs of all runs for protein inference Append files (but do no merge as ProteinQuantifierneeds to distinguis where IDs came from) Spectrum Files (.mzML)Node 2Node 4Protein Database (.fasta)search engunemapping to proteinsNode 80Node 81Node 82Node 83Node 84Node 98Node 99Node 101Node 102Node 103Input Files ZipLoopStart ZipLoopEnd Input File XTandemAdapter PeptideIndexer IDMerger ProteinInference FalseDiscoveryRate MzTabExporter MzTabReader ProteinQuantifier IDMerger URI Port toVariable CSV Reader String to Path(Variable)

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: walzer
Created at: 2014-08-25
On NodePit since: 2021-09-07
Last update: 2024-04-24
Created with KNIME version: v4.4.1

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!