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SpecLibCreator

Generic Workflow Nodes for KNIME: OpenMS version 2.3.0.201712211252 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Creates an MSP formatted spectral library.

Web Documentation for SpecLibCreator

Options

version
Version of the tool that generated this parameters file.
itemseperator
Separator between items. e.g. ,
itemenclosed
'true' or 'false' if true every item is enclosed e.g. '$peptide$,$run$...
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Holds id, peptide, retention time etc. [csv]
spectra [mzData,mzXML]

Output Ports

output MSP formatted spectra library [msp]

Views

SpecLibCreator Std Output
The text sent to standard out during the execution of SpecLibCreator.
SpecLibCreator Error Output
The text sent to standard error during the execution of SpecLibCreator. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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