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OpenSwathRewriteToFeatureXML

Generic Workflow Nodes for KNIME: OpenMS version 2.5.0.202002201806 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Combines featureXML and mProphet tsv to FDR filtered featureXML.

Web Documentation for OpenSwathRewriteToFeatureXML

Options

version
Version of the tool that generated this parameters file.
FDR_cutoff
FDR cutoff (e.g. to remove all features with a an m_score above 0.05 use 0.05 here)
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

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mProphet tsv output file: "all_peakgroups.xls" [csv,opt.]
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input featureXML file [featureXML]

Output Ports

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output featureXML file [featureXML]

Views

OpenSwathRewriteToFeatureXML Std Output
The text sent to standard out during the execution of OpenSwathRewriteToFeatureXML.
OpenSwathRewriteToFeatureXML Error Output
The text sent to standard error during the execution of OpenSwathRewriteToFeatureXML. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
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Developers

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