OpenSwathRewriteToFeatureXML

Combines featureXML and mProphet tsv to FDR filtered featureXML.

Web Documentation for OpenSwathRewriteToFeatureXML

Options

version
Version of the tool that generated this parameters file.
FDR_cutoff
FDR cutoff (e.g. to remove all features with a an m_score above 0.05 use 0.05 here)
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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mProphet tsv output file: "all_peakgroups.xls" [csv,opt.]
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input featureXML file [featureXML]

Output Ports

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output featureXML file [featureXML]

Popular Predecessors

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Views

OpenSwathRewriteToFeatureXML Std Output
The text sent to standard out during the execution of OpenSwathRewriteToFeatureXML.
OpenSwathRewriteToFeatureXML Error Output
The text sent to standard error during the execution of OpenSwathRewriteToFeatureXML. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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Further Links

Developers

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