DigestorMotif

digests a protein database in-silico

Web Documentation for DigestorMotif

Options

version
Version of the tool that generated this parameters file.
missed_cleavages
the number of allowed missed cleavages
mass_accuracy
give your mass accuracy in ppb
min_length
minimum length of peptide
out_option
indicate 1 (peptide table only), 2 (statistics only) or (both peptide table + statistics)
enzyme
The enzyme used for peptide digestion.
motif
the motif for the restricted peptidome
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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FASTA input file [fasta]

Output Ports

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output file (peptides)#br# [idXML]

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DigestorMotif Std Output
The text sent to standard out during the execution of DigestorMotif.
DigestorMotif Error Output
The text sent to standard error during the execution of DigestorMotif. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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Further Links

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