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Digestor

Generic Workflow Nodes for KNIME: OpenMS version 2.3.0.201712211252 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Digests a protein database in-silico.

Web Documentation for Digestor

Options

version
Version of the tool that generated this parameters file.
out_type
Set this if you cannot control the filename of 'out', e.g., in TOPPAS.
missed_cleavages
The number of allowed missed cleavages
min_length
Minimum length of peptide
max_length
Maximum length of peptide
enzyme
The type of digestion enzyme
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

input file [fasta]

Output Ports

Output file (peptides) [idXML,fasta]

Views

Digestor Std Output
The text sent to standard out during the execution of Digestor.
Digestor Error Output
The text sent to standard error during the execution of Digestor. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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