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DeMeanderize

Generic Workflow Nodes for KNIME: OpenMS version 2.5.0.202002201806 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Orders the spectra of MALDI spotting plates correctly.

Web Documentation for DeMeanderize

Options

version
Version of the tool that generated this parameters file.
num_spots_per_row
Number of spots in one column, until next row is spotted.
RT_distance
RT distance between two spots which is used to calculated pseudo RT.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

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Input experiment file, containing the wrongly sorted spectra. [mzML]

Output Ports

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Output experiment file with correctly sorted spectra. [mzML]

Views

DeMeanderize Std Output
The text sent to standard out during the execution of DeMeanderize.
DeMeanderize Error Output
The text sent to standard error during the execution of DeMeanderize. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
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Developers

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