IconDatabaseFilter0 ×

Generic Workflow Nodes for KNIME: OpenMS version 2.3.0.201712211252 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Filters a protein database (FASTA format) based on identified proteins

Web Documentation for DatabaseFilter

Options

version
Version of the tool that generated this parameters file.
method
Switch between white-/blacklisting
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Input FASTA file, containing a database. [fasta]
Input file containing identified peptides and proteins. [idXML,mzid]

Output Ports

Output FASTA file where the reduced database will be written to. [fasta]

Views

DatabaseFilter Std Output
The text sent to standard out during the execution of DatabaseFilter.
DatabaseFilter Error Output
The text sent to standard error during the execution of DatabaseFilter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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