DatabaseFilter

Filters a protein database (FASTA format) based on identified proteins

Web Documentation for DatabaseFilter

Options

version
Version of the tool that generated this parameters file.
method
Switch between white-/blacklisting
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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Input FASTA file, containing a database. [fasta]
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Input file containing identified peptides and proteins. [idXML,mzid]

Output Ports

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Output FASTA file where the reduced database will be written to. [fasta]

Views

DatabaseFilter Std Output
The text sent to standard out during the execution of DatabaseFilter.
DatabaseFilter Error Output
The text sent to standard error during the execution of DatabaseFilter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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Links

Developers

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