This node is currently not available in KNIME v5.2 — instead we’re showing this page for KNIME v3.7. You can use the version menu in the title bar to permanently switch your preferred version. This will also show the link to the update site.

SmallMoleculeMzTabReader

This node reads the small molecule section of the mzTab standard (as of 07/2013) into a table. mzTab files from other sections of the standard will make the execution fail, so make sure that you only provide data from the small molecule section. Note: This read will ignore all optional columns in the table.

Options

include optional columns: Defines if the parser simply ignores any optional column found in the mzTab file or if he includes it in the final table. Note that if set to true, the final table specification can only be generated when the node is executed.

Input Ports

: The mzTab file containing the small molecule data.

Output Ports

: Datatable containing the small molecule information from the mzTab file.

Popular Predecessors

Popular Successors

Views

This node has no views

Workflows

No workflows found

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.

Installation

To use this node in KNIME, install the extension OpenMS from the below update site following our NodePit Product and Node Installation Guide:

v3.7

A zipped version of the software site can be downloaded here.

Plugin provider: The OpenMS Team

Plugin version: 0.1.1.201810021716

On NodePit since: 2018-08-10

Last update: 2024-04-15

KNIME versions: From v3.6 to v4.1

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!