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MetaboliteSpectralMatcher

Generic Workflow Nodes for KNIME: OpenMS version 2.4.0.201810261314 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Perform a spectral library search.

Web Documentation for MetaboliteSpectralMatcher

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)
prec_mass_error_value
Error allowed for precursor ion mass.
frag_mass_error_value
Error allowed for product ions.
mass_error_unit
Unit of mass error (ppm or Da)
report_mode
Which results shall be reported: the top-three scoring ones or the best scoring one?
ionization_mode
Positive or negative ionization mode?

Input Ports

Input spectra. [mzML]
Default spectral database. [mzML,opt.]

Output Ports

mzTab file [mzTab]

Views

MetaboliteSpectralMatcher Std Output
The text sent to standard out during the execution of MetaboliteSpectralMatcher.
MetaboliteSpectralMatcher Error Output
The text sent to standard error during the execution of MetaboliteSpectralMatcher. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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