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PIA Compiler
PIA nodes for KNIME Workbench version 1.3.11.v201907181152 by Medizinisches Proteom-Center, Medical Bioinformatics
To start a new analysis, you need to compile the search results of one or more search engine runs. The data is structured to speed up further analyses. The result is saved as an XML file, which is used as input for the PIA analysis nodes.
Options
- input files
- Path or local URLs to search engine result files.
- name
- A distinctive name of the compilation, can be left blank.
Input Ports
- The spectrum identification results files, which should be compiled for this analysis. Either the path to the files or the local URLs are required.
Output Ports
- The PIA intermediate XML file containing the compilation of search results. To save space the file will be stored as GZipped binary file. It can be saved to any Location using the "Binary Objects to Files" node.
Views
- summary
- A short summary of the compilation.
Best Friends (Incoming)
- Port to URI (42 %)
- List Files (13 %)
- Concatenate (11 %) Streamable
- Chunk Loop Start (8 %)
- PIA Analysis (3 %)
- PIA Compiler (3 %)
- IDTextReader (3 %)
- URI to String (3 %)
- URL to File Path (3 %) Streamable
- Table Row To Variable Loop Start (3 %)
- Loop End (3 %)
- Row Filter (3 %) Streamable
- File Upload (3 %)
- Bio Sequence Reader (3 %)
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Best Friends (Outgoing)
- PIA Analysis (79 %)
- PIA Wizard (4 %)
- PIA Compiler (4 %)
- Binary Objects to Files (4 %)
- Java Edit Variable (4 %)
- Loop End (4 %)
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Installation
To use this node in KNIME, install PIA from the following update site:
KNIME 4.0
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extension for your KNIME Analytics Platform.
Developers
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