PIA Compiler

PIA nodes for KNIME Workbench version 1.3.9.v201809131534 by Medizinisches Proteom-Center, Medical Bioinformatics

To start a new analysis, you need to compile the search results of one or more search engine runs. The data is structured to speed up further analyses. The result is saved as an XML file, which is used as input for the PIA analysis nodes.

Options

input files

Path or local URLs to search engine result files.

name

A distinctive name of the compilation, can be left blank.

Input Ports

The spectrum identification results files, which should be compiled for this analysis. Either the path to the files or the local URLs are required.

Output Ports

The PIA intermediate XML file containing the compilation of search results. To save space the file will be stored as GZipped binary file. It can be saved to any Location using the "Binary Objects to Files" node.

Views

summary

A short summary of the compilation.

Best Friends (Incoming)

• Port to URI (44 %) Manipulator
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• Concatenate (12 %) ManipulatorStreamable
• PIA Compiler (3 %) Source
• IDTextReader (3 %) Manipulator
• URI to String (3 %) Manipulator
• URL to File Path (3 %) ManipulatorStreamable
• Loop End (3 %) LoopEnd
• File Upload (3 %) QuickForm
• Table Row To Variable Loop Start (< 1 %) LoopStart
• Row Filter (< 1 %) ManipulatorStreamable
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Best Friends (Outgoing)

• PIA Analysis (82 %) Predictor
• PIA Wizard (5 %) 
• PIA Compiler (5 %) Source
• Binary Objects to Files (5 %) Manipulator
• Loop End (5 %) LoopEnd
• Java Edit Variable (< 1 %) Manipulator
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Installation

To use this node in KNIME, install PIA nodes for KNIME Workbench from the following update site: