SamTools

The SamTools node enables the access to several SAMtools utilities.
For more information, see the SAMtools help page

Options

Preference page

HTE
Set a threshold for repeated execution.Only used if HTE is enabled in the preference page.
Path to samtools
Set the path to the SAMtools executable (only if no inport is available)
Path to reference sequence
Set the path to the reference sequence (only if no inport is available)

Input Ports

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Optional Inport
Cell 0: Path to input BAM/SAM file

Output Ports

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Cell 0: Path to Outfile

Views

STDOUT / STDERR
The node offers a direct view of its standard out and the standard error of the tool.

Workflows

Links

Developers

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