PDB Connector

This Node Is Deprecated — This node is kept for backwards-compatibility, but the usage in new workflows is no longer recommended. The documentation below might contain more information.

This node has been deprecated due to the closure of the remote webservices

Input Ports

This node has no input ports

Output Ports

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One-column table of PDB IDs that match query
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Custom report fields.

Popular Predecessors

Popular Successors

  • PDB Downloader21 %
  • PDB Loader13 %
  • MarvinSpace8 %
  • GroupBy8 %
  • Interactive Table8 %
  • Data to Report4 %
  • Extract Variables (Data)4 %
  • Loop End (2 ports)4 %
  • Loop End4 %
  • Column Filter4 %
  • Rule-based Row Filter4 %
  • Lift Chart4 %
  • Molecule Type Cast4 %
  • Table to PDF4 %
  • Python Script4 %

Views

This node has no views

Workflows

Links

Developers

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Installation

To use this node in KNIME, install the extension Vernalis KNIME Nodes from the below update site following our NodePit Product and Node Installation Guide:

v5.12
Plugin provider: Vernalis Research, UK
Plugin version: 1.38.2.v202605270913
On NodePit since: 2026-07-06
Last update: 2026-07-16
Tags: Deprecated
KNIME versions: v5.12, v5.11, v5.10, v5.9, v5.8, v5.7, v5.6, v5.5, v5.4, v5.3, v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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