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3D_​segmentation_​DistanceMeasurements

change parameters configure change sigma Node 30optionalNode 803Node 811Node 812Read all channelsNode 1246spot 1spot 2Generate single spot image (1x1x1)Node 1771Node 1785Organelle - Otsusplit channelschannnelsspot1spot2Node 1806Node 1807image nameNode 1809check segmentationtranslating or notNode 1822 all spotsBlur imagesdistance mapsCheck spots on organellesTranslating DeepDistance from boundaryNode 1870spots in organelleNode 1884translating spots in organelleJoiner Row Filter Chunk Loop Start List Files RowID Configuration Image Reader(Table) Table Rowto Variable Spot Detection (Subpixellocalization) Spot Detection (Subpixellocalization) TransformTracking Data Image Generator Input parametersfor Spot detection Spotco-localisation Test spot localizationto segments Loop End GroupBy Global Thresholder Splitter Column Rename Set Image Metadata TransformTracking Data Set Image Metadata Joiner Column Filter ConstantValue Column GroupBy Image Viewer Row Splitter Rule Engine Excel Writer (XLS) GaussianConvolution Image Viewer InteractiveSegmentation View Row Filter Distance Map (withCalibration) Row Filter Excel Writer (XLS) Distance FromCentroid Row Filter Excel Writer (XLS) change parameters configure change sigma Node 30optionalNode 803Node 811Node 812Read all channelsNode 1246spot 1spot 2Generate single spot image (1x1x1)Node 1771Node 1785Organelle - Otsusplit channelschannnelsspot1spot2Node 1806Node 1807image nameNode 1809check segmentationtranslating or notNode 1822 all spotsBlur imagesdistance mapsCheck spots on organellesTranslating DeepDistance from boundaryNode 1870spots in organelleNode 1884translating spots in organelleJoiner Row Filter Chunk Loop Start List Files RowID Configuration Image Reader(Table) Table Rowto Variable Spot Detection (Subpixellocalization) Spot Detection (Subpixellocalization) TransformTracking Data Image Generator Input parametersfor Spot detection Spotco-localisation Test spot localizationto segments Loop End GroupBy Global Thresholder Splitter Column Rename Set Image Metadata TransformTracking Data Set Image Metadata Joiner Column Filter ConstantValue Column GroupBy Image Viewer Row Splitter Rule Engine Excel Writer (XLS) GaussianConvolution Image Viewer InteractiveSegmentation View Row Filter Distance Map (withCalibration) Row Filter Excel Writer (XLS) Distance FromCentroid Row Filter Excel Writer (XLS)

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Created by: Daniel Mateju
Created at: 2020-01-08
On NodePit since: 2020-04-17
Last update: 2024-11-17
Created with KNIME version: v3.7.2
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