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Binding pocket surface --- algorithm 1

Binding pocket surface

Binding pocket surface

Add the binding pocket surface

Last change(s):
21.1.2 Surface coloring controlled from the Admin page

Input: Pose viewer 3D column from a docking
Output column(s):
- 3D structure and surface

Parameters:
- Surface coloring (green or proximity)
eg -SurfaceColor green

Changelog:21.1.2 Surface coloring controlled from the Admin page algorithm 1 LiveReportColumn from the LiveReportselected in the Parametrized model panelLiveDesignUsing the "1 column input"generic protocolPV outputIterationSitemap surface LigandLigands and proteins DisabledOutputCommandSurface coloringeg -SurfaceColor green%input%preparationCSV Reader(deprecated) CredentialsConfiguration Upload asLiveDesign Model Group Loop Start Sitemap surface Cross Joiner Loop End Row Filter Read structures Test locally locally theLiveDesign KNIME model Testing Table Viewer Table Viewer StringConfiguration Output columns Changelog:21.1.2 Surface coloring controlled from the Admin page algorithm 1 LiveReportColumn from the LiveReportselected in the Parametrized model panelLiveDesignUsing the "1 column input"generic protocolPV outputIterationSitemap surface LigandLigands and proteins DisabledOutputCommandSurface coloringeg -SurfaceColor green%input%preparationCSV Reader(deprecated) CredentialsConfiguration Upload asLiveDesign Model Group Loop Start Sitemap surface Cross Joiner Loop End Row Filter Read structures Test locally locally theLiveDesign KNIME model Testing Table Viewer Table Viewer StringConfiguration Output columns

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To use this workflow in KNIME, download it from the below URL and open it in KNIME:

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Created by: jcmozzic
Created at: 2020-01-31
On NodePit since: 2021-10-07
Last update: 2026-01-12
Created with KNIME version: v4.3.2

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