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OpenSwath

Directly uses the OpenSWATHWorkflow node with inputs and outputs.
Requires an existing Assay Library as input.

Example input data:
To download the data from the archive linked below, check the box on the folder and click on the download button (arrow) on the top left.
Download and unpack the "Example_Data" data into a directory "Example_data" right inside your KNIME workspace.

OpenSWATH workflow for DIA data analysisDirectly uses the OpenSWATHWorkflow node with inputs and outputs.Requires an existing Assay Library as input. Node 1OpenSWATH quantificationOpenSWATH chromatogramsSWATH MS filesAssay LibraryAssay Library (iRT) OpenSwathWorkflow File Exporter File Exporter File Importer File Importer File Importer OpenSWATH workflow for DIA data analysisDirectly uses the OpenSWATHWorkflow node with inputs and outputs.Requires an existing Assay Library as input. Node 1OpenSWATH quantificationOpenSWATH chromatogramsSWATH MS filesAssay LibraryAssay Library (iRT) OpenSwathWorkflow File Exporter File Exporter File Importer File Importer File Importer

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: alka
Created at: 2018-12-05
On NodePit since: 2023-05-06
Last update: 2024-04-25
Created with KNIME version: v4.7.3
Tags: OpenMSMass spectrometryOpenSWATHSWATHDIA

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