This directory contains 19 workflows.
This workflow performs a basic peptide identification search. The mzML files are searched with X!Tandem against a protein database. The results are […]
This workflow performs a basic peptide identification search, infers proteins and computes abundances using spectral counting. The mzML files are searched […]
Uses Decoy generation from DDA data, targeted DIA analysis using OpenSWATH and pyprophet for statistical validation. Example input data: To download the […]
## Description OpenMS exam workflow for the analysis of isobaric data (e.g. TMT). A) Quantification via the IsobaricAnalzyer B) Score estimation and […]
Identification with X!Tandem in the ID meta node, Protein Inference with Fido and protein quantification based on feature intensities with […]
Uses accurate mass based on multiple adduct grouping steps (adducts, neutral losses). Example input data: To download the data from the archive linked […]
Uses adduct grouping and de-novo identification with SIRIUS/CSI:FingerID. Example input data: To download the data from the archive linked below, check […]
Quantification and identification via accurate mass search with downstream processing and visualisation. Example input data: To download the data from […]
Identification of small molecules via spectral library search using MetaboliteSpectralMatcher. Example input data: To download the data from the archive […]
Uses MSstatsConverter to make tables that are processed in short R code scripts in various nodes. A consensusXML file from an LFQ workflow is required as […]
Do you have feedback, questions, comments about NodePit, want to support this platform, or want your own nodes or workflows listed here as well? Do you think, the search results could be improved or something is missing? Then please get in touch! Alternatively, you can send us an email to mail@nodepit.com, follow @NodePit on Twitter or botsin.space/@nodepit on Mastodon.
Please note that this is only about NodePit. We do not provide general support for KNIME — please use the KNIME forums instead.