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basic_​peptide_​identification

This workflow performs a basic peptide identification search.
The mzML files are searched with X!Tandem against a protein database.
The results are written out in idXML format into a specified directory.

Example input data:
To download the data from the archive linked below, check the box on the folder and click on the download button (arrow) on the top left.
Download and unpack the "Example_Data" data into a directory "Example_data" right inside your KNIME workspace.

Basic Peptide IdentificationThis workflow performs a basic peptide identification search.The mzML files are searched with X!Tandem against a protein database.The results are written out in idXML format into a specified directory. Define input data here.If the example data is used, it shouldbe in Example_Data next to thisworkflow. Define the outputdirectory here.One idXML output file foreach mzML input file willbe written out in thisdirectory. Node 2Node 4Node 78Spectrum Files (.mzML)OutputProtein Database (.fasta) ZipLoopStart ZipLoopEnd XTandemAdapter File Importer File Exporter File Importer Basic Peptide IdentificationThis workflow performs a basic peptide identification search.The mzML files are searched with X!Tandem against a protein database.The results are written out in idXML format into a specified directory. Define input data here.If the example data is used, it shouldbe in Example_Data next to thisworkflow. Define the outputdirectory here.One idXML output file foreach mzML input file willbe written out in thisdirectory. Node 2Node 4Node 78Spectrum Files (.mzML)OutputProtein Database (.fasta) ZipLoopStart ZipLoopEnd XTandemAdapter File Importer File Exporter File Importer

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