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MSstatsTMT

Post processing workflow for MSstatsTMT.
Requires output from MSstatsConverter output.

As an example input, an intermediate result from the workflow:
"Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT"
can be used (box H). The analysis steps in this workflow are also included in that workflow.

MSstatsTMT analysis via R scripts MSstats post-processing for TMTPost processing workflow for using MSstatsTMT.Requires output from MSstatsConverter output from e.g. the workflow"Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT".This analysis is also included in that workflow. Input: MSstatsConverter OutputLoad requiredpackagesActual statistical analysiswith Volcano Plot.Play around with contrasts here.Input: MSstatsTMT_plot_output_directory File Importer URI Port toVariable R Source(Workspace) R View (Workspace) Merge Variables(deprecated) StringConfiguration MSstatsTMT analysis via R scripts MSstats post-processing for TMTPost processing workflow for using MSstatsTMT.Requires output from MSstatsConverter output from e.g. the workflow"Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT".This analysis is also included in that workflow. Input: MSstatsConverter OutputLoad requiredpackagesActual statistical analysiswith Volcano Plot.Play around with contrasts here.Input: MSstatsTMT_plot_output_directory File Importer URI Port toVariable R Source(Workspace) R View (Workspace) Merge Variables(deprecated) StringConfiguration

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