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R - Genome Data - msigdbr - KNIME Forum (90806)

<p>Trying to download Genome data with R package msigdbr</p>

URL: Trying to download Genome data with R package msigdbr https://forum.knime.com/t/r-snippets-not-working-in-knime-on-macos/90806/2?u=mlauber71
URL: KNIME / R Community Nodes — starting Rserve https://medium.com/p/6494a2a498cc#0dfe

library(Rserve)

library(RSclient)

Rserve(port = 6311, debug = FALSE, args = "--vanilla")

rsc <- RSconnect(port = 6311)

RSshutdown(rsc)

Trying to download Genome data with R package msigdbr

https://forum.knime.com/t/r-snippets-not-working-in-knime-on-macos/90806/2?u=mlauber71

KNIME and R — installation across operating systems — some remarks

https://medium.com/p/6494a2a498cc

KNIME / R Community Nodes — starting Rserve

https://medium.com/p/6494a2a498cc#0dfe

A problem with the KNIME Snippet connecting to the internet

https://forum.knime.com/t/using-baseballr-in-knime/77634/16?u=mlauber71

https://forum.knime.com/search?q=knime.tmp.ret%20order%3Alatest

install.packages("remotes")

remotes::install_version("msigdbr", version = "7.5.1")

using msigdbrversion 7.5.1
R Source (Table)
needs Rserve runningin the backgroud
R Snippet
Table Creator
result_r_community_nodes.table
Table Writer
R Source (Workspace)
locate and create /data/ folder with absolute paths
Collect Local Metadata
Java Edit Variable (simple)
result_r_offline.table
Table Writer

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: m_lauber
Created at: 2025-11-26
On NodePit since: 2025-11-26
Last update: 2025-11-29
Created with KNIME version: v5.8.1
Tags: msigdbr

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