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06_​High_​Content_​Screening

High Content Screening

This tutorial workflow shows a High-content screening workflow. Of course parameters and methods have to be adjusted for your problem, but this is a good starting point.

General InformationPress the green double arrow above to run the complete workflow. You may have to scroll down to see all contentsof this tutorial.To see the contents of a meta node (grey nodes) you can Double-Click on it, which opens a new tab with the nodescontained in this meta node.Workflow Description:SBS Bioimage CNT image set provided by Ilya Ravkin and available from the Broad Bioimage BenchmarkCollection- for details and biological background see http://www.broadinstitute.org/bbbc/sbs_bioimage_cnt.html- 96-well plate, file name structure is <well-number>-<row>-<column>, well plate design given at the respectivelinkThis tutorial workflow shows a High-content-screening-workflow. Of course parameters and methods have to beadjusted for your problem, but this is a good starting point.If you need more information about other topics, maybe our tutorials. For details see:http://tech.knime.org/community/image-processingIf you have any questions please contact us via our forum:http://tech.knime.org/forum/knime-image-processing/Workflow Requirements:KNIME 3.0.0KNIME Image Processing 1.4.0Workflow updated on 17/09/2015 Loading ImagesFeature Extraction Model Learning Segmentation Analysis Check Preprocessing Image Reader General InformationPress the green double arrow above to run the complete workflow. You may have to scroll down to see all contentsof this tutorial.To see the contents of a meta node (grey nodes) you can Double-Click on it, which opens a new tab with the nodescontained in this meta node.Workflow Description:SBS Bioimage CNT image set provided by Ilya Ravkin and available from the Broad Bioimage BenchmarkCollection- for details and biological background see http://www.broadinstitute.org/bbbc/sbs_bioimage_cnt.html- 96-well plate, file name structure is <well-number>-<row>-<column>, well plate design given at the respectivelinkThis tutorial workflow shows a High-content-screening-workflow. Of course parameters and methods have to beadjusted for your problem, but this is a good starting point.If you need more information about other topics, maybe our tutorials. For details see:http://tech.knime.org/community/image-processingIf you have any questions please contact us via our forum:http://tech.knime.org/forum/knime-image-processing/Workflow Requirements:KNIME 3.0.0KNIME Image Processing 1.4.0Workflow updated on 17/09/2015 Loading ImagesFeature Extraction Model Learning Segmentation Analysis Check Preprocessing Image Reader

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
On NodePit since: 2019-07-12
Last update: 2024-04-16
Created with KNIME version: v3.1.3

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