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Compound Exploration

<p><strong>Compound Exploration</strong></p><p>This Data App allows to calculate molecular properties of compounds and explore them in the context of their assay test results.</p><p>Users can upload a file containing compounds (represented either as SMILES or SDF) and their assay readouts (two fluorescent stainings). After selecting the column that contains the molecule representation and the molecular properties to be calculated, the data can be explored and filtered interactively. In the last step, users can define which columns from the original input table and which newly created data (molecule images and one row for each selected molecular property) to include in the result, which can be downloaded as an Excel file.</p>

Compound Exploration


This Data App allows to calculate molecular properties of compounds and explore them in the context of their assay test results.

Users can upload a file containing compounds (represented either as SMILES or SDF) and their assay readouts (two fluorescent stainings). After selecting the column that contains the molecule representation and the molecular properties to be calculated, the data can be explored and filtered interactively. In the last step, users can define which columns from the original input table and which newly created data (molecule images and one row for each selected molecular property) to include in the result, which can be downloaded as an Excel file.

Inspect compounds upon their molecular properties in relation to assay results
Download results table
Upload a file
Set molecular properties to be calculated
Column Selection Error
if 0 => column contains molecules that can be parsed by RDKit if 1 => wrong column
CASE Switch Start
Check Molecule Parsing
SDF or SMILES
RDKit From Molecule
RDKit Descriptor Calculation
.csv, .tsv, .xls, .xlsx or KNIME-native .table
Fake File Upload
Column selection, file name and download
Download
Renderer to Image
convert string to SMILES or SDF
Molecule Type Cast
whatever column the user chose, make it a string
String Manipulation
Select pertinentcolumns/moleculardescriptors
Select Molecular Properties
Interactive View for Data Exploration
Explore Compounds

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