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Build antibody 1-2

Workflow

Build Antibody Models
ProteinBioluminate
Build Antibody Models: Several antibody models are built using Bioluminate starting from the heavy and light chain sequences.Sequences can be read from an XLS spreadsheet. Post-translational modifications and protein descriptors are calculated for each model and the latter can be usedas input to BioQSPR. [Requires: Bioluminate] Built models %file% 2 CPUs Numbering scheme,Number of models to build Input SequenceBioluminatebuild antibodyand Model IDas RowIDAntibodies Model inspection%file%all Model inspectioncalc_protein_descriptors.pyProtein descriptorsProperty listSettings:Numbering scheme,Number of models to build,PDB ID for fv template,Auto Fab option ScriptoptionsAggScoreAggregation scoreAll properties%file% To be used in BioQSPR for instanceProperties onlybuild_antibody.py Scriptoptions Reactive Residue TableFilter by ExposurePost-translationalModifications Model inspection%file% Excel_to_fasta Molecule Writer(from MAE) Chunk Loop Start Loop End ParallelChunk Start Parallel Chunk End Settings Preprocessing Input ChemistryExternal Tool Group Get PDB Postprocessing Run Maestro Molecule Writer(from MAE) Job Control Run Maestro Get Help ChemistryExternal Tool Table Viewer Build antibody Table Viewer Column Filter Table Viewer Table Viewer CSV Writer Column Filter Get Help Table Viewer Postprocessing Postprocessing Row Filter RowID Column Resorter ChemistryExternal Tool Postprocessing Row Filter Table Viewer Run Maestro CSV Writer Excel Reader (XLS) Build Antibody Models: Several antibody models are built using Bioluminate starting from the heavy and light chain sequences.Sequences can be read from an XLS spreadsheet. Post-translational modifications and protein descriptors are calculated for each model and the latter can be usedas input to BioQSPR. [Requires: Bioluminate] Built models %file% 2 CPUs Numbering scheme,Number of models to build Input SequenceBioluminatebuild antibodyand Model IDas RowIDAntibodies Model inspection%file%all Model inspectioncalc_protein_descriptors.pyProtein descriptorsProperty listSettings:Numbering scheme,Number of models to build,PDB ID for fv template,Auto Fab option ScriptoptionsAggScoreAggregation scoreAll properties%file% To be used in BioQSPR for instanceProperties onlybuild_antibody.py Scriptoptions Reactive Residue TableFilter by ExposurePost-translationalModifications Model inspection%file% Excel_to_fasta Molecule Writer(from MAE) Chunk Loop Start Loop End ParallelChunk Start Parallel Chunk End Settings Preprocessing Input ChemistryExternal Tool Group Get PDB Postprocessing Run Maestro Molecule Writer(from MAE) Job Control Run Maestro Get Help ChemistryExternal Tool Table Viewer Build antibody Table Viewer Column Filter Table Viewer Table Viewer CSV Writer Column Filter Get Help Table Viewer Postprocessing Postprocessing Row Filter RowID Column Resorter ChemistryExternal Tool Postprocessing Row Filter Table Viewer Run Maestro CSV Writer Excel Reader (XLS)

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Nodes

Build antibody 1-2 consists of the following 196 nodes(s):

Plugins

Build antibody 1-2 contains nodes provided by the following 7 plugin(s):