Icon

BLAST_​the_​tree

BLAST from the PAST

This example shows how to run the BLAST RESTful interfaces to submit BLAST searches inside of KNIME Analytics Platform. BLAST (Basic Local Alignment Search Tool) is a fast and robust algorithm that finds regions of similarity between biological sequences. In this example we use BLAST inside KNIME Analytics Platform to compare DNA extracted from a bone with a database of DNA sequences and find out which organism the bone belongs to.

get samples nucleotide sequecein fasta format and write in .faa fileNode 15make alignment by Clustalw2Construct phylogenetic treeNode 95Node 96Python Script Combine Python Script Python Script Show BLAST Results Sequance input Data preparation Getting BLASTresult Control panel get samples nucleotide sequecein fasta format and write in .faa fileNode 15make alignment by Clustalw2Construct phylogenetic treeNode 95Node 96Python Script Combine Python Script Python Script Show BLAST Results Sequance input Data preparation Getting BLASTresult Control panel

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: Oleg Yasnev
Created at: 2017-10-06
On NodePit since: 2022-02-06
Last update: 2024-05-03
Created with KNIME version: v4.3.1
Tags: bioinformaticsDNA sequence comparisonasynchronous REST operationsBLAST RESTful interfacesbiologyDNA

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!