Node Connectivity

There are 5185 nodes that can be used as predessesor for a node with an input port of type Generic Port.

Interaction Types Retriever 

KNIME node to retrieve the different interaction types that are encoded for each pocket residue in the interaction fingerprint.

Ligands Overview Retriever 

KNIME node to retrieve a list of all co-crystallized ligands (optionally for a given set of kinase IDs) from KLIFS.

Structures Overview Retriever 

KNIME node to retrieve a list of structure IDs from KLIFS of structures in complex with specific kinases (kinase IDs) or ligands (ligand IDs).

Structures PDB Mapper 

KNIME node to map a set of 4-letter PDB-codes to structure IDs from KLIFS.

Structures Retriever 

KNIME node to retrieve (a part of) a kinase-ligand complex as a 3D structure in MOL2/PDB format from KLIFS.

Fragment information 

Find Kripo fragment information by their identifier.

Pharmacophore 

Retrieve Kripo pharmacophores.

Similar fragments 

Find similar fragments to queries based on the Kripo fingerprint similarity matrix.

Ligands and Proteins Viewer 

Node to view ligands and proteins

Ligands Viewer 

Node to view ligands in 3D