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Structures PDB Mapper

KNIME 3D-e-Chem Contributions version 1.1.2.v201907021300 by 3D-e-Chem

KNIME node to map a set of 4-letter PDB-codes to structure IDs from KLIFS. This node maps a set of user-supplied 4-letter structure PDB-codes to the KLIFS structure IDs and additionally provides all related structural information from KLIFS (see the description of the Structures Overview Retriever node for a detailed listing). The mapping functionality of this node can, for example, be used to selectively retrieve KLIFS information for a set of PDBs, or to link external data to KLIFS information using PDB-codes.

Options

Advanced Options

Base path
Url to use as base path for KLIFS webservice
Timeout
Timeout in seconds to wait for KLIFS webservice response

Input Ports

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List of 4-letter PDB-codes that will be mapped to KLIFS structure IDs.

Output Ports

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All structural information obtained from KLIFS for the given PDBs

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install KLIFS KNIME nodes from the following update site:

KNIME 4.3

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Developers

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