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Similar fragments

3D-e-Chem KNIME KripoDB nodes version 2.3.0.v201707211425 by Netherlands eScience Center

KRIPO stands for Key Representation of Interaction in POckets .

Find similar fragments bound to similar subpockets as the subpocket associated with the query fragment based on the fingerprint similarity matrix.

When combining this node with other Kripo nodes make sure the files are from the same dataset.

The public web service most recent data update was on.

Options

Advanced Options

Base path: Url to use as base path for Kripo webservice
Timeout: Timeout in seconds to wait for Kripo webservice response

Input Ports

: Table with Kripo fragment identifiers

Output Ports

: Table with similar Kripo identifiers and scores vs the input table.

Best Friends (Incoming)

Row Filter (50 %) ManipulatorStreamable
RDKit Molecule Substructure Filter (50 %) Manipulator
MarvinSketch (< 1 %) Source

Best Friends (Outgoing)

~~Cell Splitter~~ (50 %) ManipulatorDeprecated
Joiner (50 %) Manipulator
Fragment information (< 1 %) Manipulator
Table to PDF (< 1 %) Visualizer

Installation

To use this node in KNIME, install 3D-e-Chem KNIME KripoDB nodes from the following update site:

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