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Fragment information

3D-e-Chem KNIME KripoDB nodes version 3.0.0.v202102121204 by Netherlands eScience Center

KRIPO stands for Key Representation of Interaction in POckets .

Find Kripo fragment information by their identifier.

Information includes the fragment molecule and it's associated protein identifiers.

When combining this node with other Kripo nodes make sure the files are from the same dataset.

The public web service most recent data update was on.

Instead of using the public kripo webservice it is also possible to run a local web service.

Options

Identifiers
The column containing the Kripo identifiers
Type of identifier
Can be fragment or PDB code.

Advanced Options

Base path
Url to use as base path for Kripo webservice
Timeout
Timeout in seconds to wait for Kripo webservice response
Chunk size
Number of fragments fetched within a single webservice fetch, If nr of identifiers is greater than chunk size then multiple requests will be made.

Input Ports

Icon
Table with Kripo fragment identifiers.

Output Ports

Icon
Table with Kripo fragment information.

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install KripoDB nodes for KNIME from the following update site:

KNIME 4.3

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Developers

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