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Interaction Types Retriever

KNIME 3D-e-Chem Contributions version 1.1.2.v201907021300 by 3D-e-Chem

KNIME node to retrieve the different interaction types that are encoded for each pocket residue in the interaction fingerprint. This node retrieves the different interaction types for each bit position of the interaction fingerprint (IFP) method and can, for example, be used in combination with the Interaction Fingerprint Decomposer to identify what kinase-ligand interactions are present in specific structures.

Options

Advanced Options

Base path
Url to use as base path for KLIFS webservice
Timeout
Timeout in seconds to wait for KLIFS webservice response

Output Ports

Icon
Description of the different interactions types represented by the IFP bit positions. 7 bits are encoded for each binding pocket residue.

Best Friends (Outgoing)

Installation

To use this node in KNIME, install KLIFS KNIME nodes from the following update site:

KNIME 4.3

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Developers

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