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RDKit Molecule Fragmenter

RDKit Nodes for Knime version 4.0.1.v202002121352 by NIBR

Fragments a set of RDKit molecules into subgraphs


RDKit Mol column
The column containing the molecules
Min Path Length
The minimum size (in bonds) of the subgraphs to be included.
Max Path Length
The maximum size (in bonds) of the subgraphs to be included.

Input Ports

Table with RDKit molecules

Output Ports

Fragments found in the table
Table with molecules and tagged fragments.

Best Friends (Incoming)

Best Friends (Outgoing)


To use this node in KNIME, install RDKit KNIME integration from the following update site:

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