OMERO Reader (5.2)

This (experimental) reader uses OMEREO.insight to access images from OMERO databases. In the configuration phase the insight viewer is used as graphical interface to select image IDs from the database. During the node execution the images are loaded from the database and get converted into an appropriate ImgLib format.

Options

user credentials

Server

The address of the OMERO server.

Port

A port that can be used to connect with OMERO.insight to the server (default value 4064).

Connection

The speed of your server connection LAN, High (Broadband) or Low (Dial-up)

Username

The username, that you use to access the server with OMERO.insight

Password

The password, that you use to access the server with OMERO.insight

Encrypted Connection

If the connection to the server is encrypted, this equivalent to the closed padlock setting in OMERO.insight or OMERO.web.

image selection

Selection

• Fill in the user credentials form.
• Start OMERO.insight by clicking onto the start button.
• Browse the database and select images with your mouse.
• Right click on one/multiple selected images to access the context menu.
• Select "View->View in KNIME" to transmit the image ID
• Repeat this for all images that should be loaded to your workflow
• Close OMERO.insight. The image IDs are listed in the IDs field and the node is ready for execution.

Views

Table Cell View

Shows the loaded images in a table cell view

Workflows

• Example_workflowKNIME Hub

Links

• No links available

Developers