h-Dome Extraction

Options

Connection Type

Use a four or eight connected grid.

Subtract Domes of Height Before Extraction

This option controls whether domes of height x should be subtracted from the image before the domes of height h are extracted. This can be used if you are searching markers for e.g. watershed, when there are multiple small domes of height x close together that should be joined into a plateau.

Height of Domes

The height of the domes to extract.

Dimension Selection

This component allows the selection of dimensions of interest. If an algorithm cannot, as it only supports fewer dimensions than the number of dimensions of the image, or shouldnot, as one wants to run the algorithm only on subsets of the image, be applied on the complete image, the dimension selection can be used to define the plane/cube/hypercube on which the algorithm is applied. Example 1 with three dimensional Image (X,Y,Time): An algorithm cannot be applied to the complete image, as it only supports two dimensional images. If you select e.g. X,Y then the algorithm will be applied to all X,Y planes individually. Example 2 with three dimensional Image (X,Y,Time): The algorithm can be applied in two, three or even more dimensions. Select the dimensions to define your plane/cube/hypercube on which the algorithm will be applied.

Column Selection

Column Creation Mode

Mode how to handle the selected column. The processed column can be added to a new table, appended to the end of the table, or the old column can be replaced by the new result

Column Suffix

A suffix appended to the column name. If "Append" is not selected, it can be left empty.

Column Selection

Selection of the columns to be processed.

Views

Image Viewer

Another, possibly interactive, view on table cells. Displays the selected cells with their associated viewer if it exists. Available views are:
- Image Viewer
-- This viewer renders the selected image-cell.
- Missing Value Viewer
-- An empty viewer that is shown when the input cell has no value to display.
- Labeling View
-- View on a labeling/segmentation
- Combined View
-- A viewer shown when the user selects an interval of rows and columns in the viewer. This viewer combines all images and labelings in the selected interval to one image by rendering them next to each other. Alternatively, the images and labelings can be layed over each other.
- XML
-- XML tree
- Histogram Viewer
-- This viewer shows the histogram of the currently selected image.
- BigDataViewer
-- A viewer shown when the user selects an interval of rows and columns in the viewer. This viewer combines all images and labelings in the selected interval to one image by rendering them next to each other. Alternatively, the images and labelings can be layed over each other.

Workflows

• 01_Find_SeedsKNIME Hub
• 01_Watershed_SegmentationKNIME Hub

Links

• No links available

Developers