Abner tagger

This node recognizes biomedical named entities, such as genes, proteins or cells and assigns tags to the corresponding terms like "PROTEIN", "RNA", "DNA", "CELL LINE" or "CELL TYPE". Furthermore it can be specified that found named entities are marked as unmodifiable, meaning that they are not going to be modified by any node afterwards. As underlying named entity recognition software ABNER (A Biomedical named entity recognizer) was used. For more details see: http://pages.cs.wisc.edu/~bsettles/abner/.

Options

Set named entities unmodifiable

Sets recognized named entity terms unmodifiable.

ABNER model

Specifies the ABNER model to use. The Biocreative model recognizes proteins only, the NLPBA model recognizes cells, dna and rna lines as well.

Word tokenizer

Select the tokenizer used for word tokenization. Go to Preferences -> KNIME -> Textprocessing to read the description for each tokenizer.

Views

This node has no views

Workflows

• 05_DrugBank_Network_analysisKNIME Hub
• KNIME_project_exportKNIME Forum
• text2strNodePit Space
• text2strKNIME Hub

Links

• No links available

Developers