0 ×

PLANTS configuration generator

KNIME nodes for PLANTS version 0.3.5.v201906271043 by Netherlands eScience Center

Node to generate a PLANTS configuration.

Source code for PLANTS node is available on GitHub .


Search algorithm

Search speed
Search speed setting

Binding site

Center X
X coordinate of binding site sphere
Center Y
Y coordinate of binding site sphere
Center Z
Z coordinate of binding site sphere
Radius of binding site sphere

Cluster algorithm

RMSD similarity threshold
RMSD similarity threshold for cluster algorithm
Number of structures
Number of structures generated by the cluster algorithm

Scoring functions

Scoring function
Radius of binding site sphere


Protein file
Protein file in MOL2 file format
Ligand file
Ligand file file in MOL2 file format


Output directory
Protein conformations
Protein conformations
Protein binding site
Protein binding site
Protein splitted
Fixed and dynamic parts of protein in separate files
Ranked soft links
Ranked soft links
Merged protein
Merged protein

Input Ports

Input table

Output Ports

Table with added PLANTS configuration column

Best Friends (Incoming)

Best Friends (Outgoing)


To use this node in KNIME, install KNIME PLANTS extension from the following update site:


You don't know what to do with this link? Read our NodePit Product and Node Installation Guide that explains you in detail how to install nodes to your KNIME Analytics Platform.

Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform. Browse NodePit from within KNIME, install nodes with just one click and share your workflows with NodePit Space.


You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.