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TreeRecon

Generic Workflow Nodes for KNIME: SeqAn version 2.4.1.202004061533 by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Reconstruct phylogenetic tree from Phylip matrix IN.DIST.

Web Documentation for TreeRecon

Options

version-check
Turn this option off to disable version update notifications of the application.
build
Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max: UPGMA complete linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage. Neighbour-joining creates an unrooted tree. We root that tree at the least joined pair.

Input Ports

Icon
Name Phylip distance matrix file. Must contain at least three species. [dist]

Output Ports

Icon
Path to write output to. [dot,newick]

Views

TreeRecon Std Output
The text sent to standard out during the execution of TreeRecon.
TreeRecon Error Output
The text sent to standard error during the execution of TreeRecon. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install SeqAn from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

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Developers

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