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TreeRecon

Reconstruct phylogenetic tree from Phylip matrix IN.DIST.

Web Documentation for TreeRecon

Options

version-check: Turn this option off to disable version update notifications of the application.
build: Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max: UPGMA complete linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage. Neighbour-joining creates an unrooted tree. We root that tree at the least joined pair.

Input Ports

: Name Phylip distance matrix file. Must contain at least three species. [dist]

Output Ports

: Path to write output to. [dot,newick]

Popular Predecessors

Popular Successors

Views

TreeRecon Std Output: The text sent to standard out during the execution of TreeRecon.
TreeRecon Error Output: The text sent to standard error during the execution of TreeRecon. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

Ensembl API ModulesKNIME Hub

Developers

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Installation

To use this node in KNIME, install the extension SeqAn from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Plugin version: 2.4.1.202004061533

On NodePit since: 2022-12-06

Last update: 2024-12-23

KNIME versions: From v3.6 to v4.7

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