SeqAn-Flexbar is a toolkit for the processing of sequenced NGS reads and based on the original Flexbar implementation of Dodt . It is possible to demultiplex the reads and order them according to different kind of barcodes, to remove adapter contamination from reads, to trim low quality bases, filter N's or trim whole reads. The different tools are controlled through command line parameters and can operate on both single- and paired-end read data.
 Dodt, M.; Roehr, J.T.; Ahmed, R.; Dieterich, C. FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms. Biology 2012, 1, 895-905.
(c) Copyright 2008-2013 by Sebastian Roskosch.
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