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Generic Workflow Nodes for KNIME: SeqAn version by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Prepare SAM file for usage with RABEMA.

Web Documentation for RabemaPrepareSam


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Do not check sortedness.

Input Ports

Path to the input file. [sam]

Output Ports

Path to the output file. [sam]


RabemaPrepareSam Std Output
The text sent to standard out during the execution of RabemaPrepareSam.
RabemaPrepareSam Error Output
The text sent to standard error during the execution of RabemaPrepareSam. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)



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