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RabemaPrepareSam

Generic Workflow Nodes for KNIME: SeqAn version 2.4.1.202004061533 by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Prepare SAM file for usage with RABEMA.

Web Documentation for RabemaPrepareSam

Options

version-check
Turn this option off to disable version update notifications of the application.
dont-check-sorting
Do not check sortedness.

Input Ports

Icon
Path to the input file. [sam]

Output Ports

Icon
Path to the output file. [sam]

Views

RabemaPrepareSam Std Output
The text sent to standard out during the execution of RabemaPrepareSam.
RabemaPrepareSam Error Output
The text sent to standard error during the execution of RabemaPrepareSam. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install SeqAn from the following update site:

KNIME 4.2

A zipped version of the software site can be downloaded here.

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Developers

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