Generic Workflow Nodes for KNIME: SeqAn version 184.108.40.206004061533 by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team
This program allows one to build a RABEMA gold standard. The input is a reference FASTA file and a perfect SAM/BAM map (e.g. created using RazerS 3 in full-sensitivity mode).
The input SAM/BAM file must be sorted by coordinate. The program will create a FASTA index file REF.fa.fai for fast random access to the reference.
To use this node in KNIME, install SeqAn from the following update site:
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