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FxBamCoverage

Generic Workflow Nodes for KNIME: SeqAn version 2.4.1.202004061533 by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Compute read coverage and C+G content for a genome.

Web Documentation for FxBamCoverage

Options

version-check
Turn this option off to disable version update notifications of the application.
window-size
Set the size of the non-overlapping windows in base pairs.

Input Ports

Icon
Path to the reference file. [fasta,fa]
Icon
Path to the mapping file to analyze. [sam,bam]

Output Ports

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Path to the resulting file. If omitted, result is printed to stdout. [coverage.tsv]

Views

FxBamCoverage Std Output
The text sent to standard out during the execution of FxBamCoverage.
FxBamCoverage Error Output
The text sent to standard error during the execution of FxBamCoverage. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install SeqAn from the following update site:

KNIME 4.2
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Developers

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