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SequenceCoverageCalculator

Generic Workflow Nodes for KNIME: OpenMS version 2.4.0.201810261314 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Prints information about idXML files.

Web Documentation for SequenceCoverageCalculator

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

input file containing the database in FASTA format [fasta]
input file containing the identified peptides [idXML]

Output Ports

Optional text output file. If left out, the output is written to the command line. [txt,Inactive]

Views

SequenceCoverageCalculator Std Output
The text sent to standard out during the execution of SequenceCoverageCalculator.
SequenceCoverageCalculator Error Output
The text sent to standard error during the execution of SequenceCoverageCalculator. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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