SequenceCoverageCalculator

Prints information about idXML files.

Web Documentation for SequenceCoverageCalculator

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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input file containing the database in FASTA format [fasta]
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input file containing the identified peptides [idXML]

Output Ports

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Optional text output file. If left out, the output is written to the command line. [txt]

Views

SequenceCoverageCalculator Std Output
The text sent to standard out during the execution of SequenceCoverageCalculator.
SequenceCoverageCalculator Error Output
The text sent to standard error during the execution of SequenceCoverageCalculator. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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Further Links

Developers

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