RTEvaluation

Application that evaluates TPs (true positives), TNs, FPs, and FNs for an idXML file with predicted RTs.

Web Documentation for RTEvaluation

Options

version
Version of the tool that generated this parameters file.
latex
Indicates whether the output file format of the table should be LaTeX or TSV (default)
p_value_dim_1
Significance level of first dimension RT filter
p_value_dim_2
Significance level of second dimension RT filter
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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Input file [idXML]
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Fasta File [fasta,opt.]

Output Ports

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Output file [tsv]

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Views

RTEvaluation Std Output
The text sent to standard out during the execution of RTEvaluation.
RTEvaluation Error Output
The text sent to standard error during the execution of RTEvaluation. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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Further Links

Developers

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