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RTEvaluation

Generic Workflow Nodes for KNIME: OpenMS version 2.5.0.202002201806 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Application that evaluates TPs (true positives), TNs, FPs, and FNs for an idXML file with predicted RTs.

Web Documentation for RTEvaluation

Options

version
Version of the tool that generated this parameters file.
latex
Indicates whether the output file format of the table should be LaTeX or CSV (default)
p_value_dim_1
Significance level of first dimension RT filter
p_value_dim_2
Significance level of second dimension RT filter
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

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Input file [idXML]
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Fasta File [fasta,opt.]

Output Ports

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Output file [csv]

Views

RTEvaluation Std Output
The text sent to standard out during the execution of RTEvaluation.
RTEvaluation Error Output
The text sent to standard error during the execution of RTEvaluation. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
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Developers

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