NoiseFilterGaussian

Options

version

Version of the tool that generated this parameters file.

processOption

Whether to load all data and process them in-memory or whether to process the data on the fly (lowmemory) without loading the whole file into memory first

log

Name of log file (created only when specified)

debug

Sets the debug level

threads

Sets the number of threads allowed to be used by the TOPP tool

no_progress

Disables progress logging to command line

force

Overrides tool-specific checks

test

Enables the test mode (needed for internal use only)

gaussian_width

Use a gaussian filter width which has approximately the same width as your mass peaks (FWHM in m/z).

ppm_tolerance

Gaussian width, depending on the m/z position. The higher the value, the wider the peak and therefore the wider the gaussian.

use_ppm_tolerance

If true, instead of the gaussian_width value, the ppm_tolerance is used. The gaussian is calculated in each step anew, so this is much slower.

write_log_messages

true: Warn if no signal was found by the Gauss filter algorithm.

Views

NoiseFilterGaussian Std Output

The text sent to standard out during the execution of NoiseFilterGaussian.

NoiseFilterGaussian Error Output

The text sent to standard error during the execution of NoiseFilterGaussian. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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