IconMRMMapper0 ×

Generic Workflow Nodes for KNIME: OpenMS version 2.3.0.201712211252 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)

Web Documentation for MRMMapper

Options

version
Version of the tool that generated this parameters file.
precursor_tolerance
Precursor tolerance when mapping (in Th)
product_tolerance
Product tolerance when mapping (in Th)
no-strict
run in non-strict mode and allow some chromatograms to not be mapped.
allow_multiple_mappings
Allow multiple mappings (will take the last matching from the TraML)
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Input file containing chromatograms (converted mzXML file) [mzML]
transition file [TraML]

Output Ports

Output file containing mapped chromatograms [mzML]

Views

MRMMapper Std Output
The text sent to standard out during the execution of MRMMapper.
MRMMapper Error Output
The text sent to standard error during the execution of MRMMapper. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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