0 ×

MRMMapper

Generic Workflow Nodes for KNIME: OpenMS version 2.6.0.202009301213 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)

Web Documentation for MRMMapper

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)
precursor_tolerance
Precursor tolerance when mapping (in Th)
product_tolerance
Product tolerance when mapping (in Th)
map_multiple_assays
Allow to map multiple assays to chromatograms and duplicate these chromatograms in the output.
error_on_unmapped
Treat remaining, unmapped chromatograms as an error

Input Ports

Icon
Input file containing chromatograms (converted mzXML file) [mzML]
Icon
transition file [traML]

Output Ports

Icon
Output file containing mapped chromatograms [mzML]

Views

MRMMapper Std Output
The text sent to standard out during the execution of MRMMapper.
MRMMapper Error Output
The text sent to standard error during the execution of MRMMapper. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2

A zipped version of the software site can be downloaded here.

You don't know what to do with this link? Read our NodePit Product and Node Installation Guide that explains you in detail how to install nodes to your KNIME Analytics Platform.

Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform. Browse NodePit from within KNIME, install nodes with just one click and share your workflows with NodePit Space.

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.