MRMMapper

MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)

Web Documentation for MRMMapper

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)
precursor_tolerance
Precursor tolerance when mapping (in Th)
product_tolerance
Product tolerance when mapping (in Th)
map_multiple_assays
Allow to map multiple assays to chromatograms and duplicate these chromatograms in the output.
error_on_unmapped
Treat remaining, unmapped chromatograms as an error

Input Ports

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Input file containing chromatograms (converted mzXML file) [mzML]
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transition file [traML]

Output Ports

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Output file containing mapped chromatograms [mzML]

Views

MRMMapper Std Output
The text sent to standard out during the execution of MRMMapper.
MRMMapper Error Output
The text sent to standard error during the execution of MRMMapper. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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Further Links

Developers

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