ERPairFinder

Util which can be used to evaluate pair ratios on enhanced resolution (zoom) scans.

Web Documentation for ERPairFinder

Options

version
Version of the tool that generated this parameters file.
precursor_mass_tolerance
Precursor mass tolerance which is used for the pair finding and the matching of the given pair m/z values to the features.
RT_tolerance
Maximal deviation in RT dimension in seconds a feature can have when comparing to the RT values given in the pair file
max_charge
Maximal charge state features should be search for.
intensity_threshold
Intensity threshold, for the meaning see the documentation of the IsotopeWaveletFeatureFinder documentation.
max_isotope
Max isotope of the isotope distribution to be considered
expansion_range
The range that is used to extend the isotope distribution with null intensity peaks in Th.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

Icon
Input mzML file containing the ER spectra. [mzML]
Icon
Pair-file in the format: m/z-light m/z-heavy charge rt [txt]

Output Ports

Icon
Output consensusXML file were the pairs of the feature are written into. [consensusXML]
Icon
Output featureXML file, only written if given, skipped otherwise. [featureXML]

Popular Predecessors

Popular Successors

Views

ERPairFinder Std Output
The text sent to standard out during the execution of ERPairFinder.
ERPairFinder Error Output
The text sent to standard error during the execution of ERPairFinder. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

  • No workflows found

Links

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.